食品科学 ›› 2025, Vol. 46 ›› Issue (16): 165-162.doi: 10.7506/spkx1002-6630-20250218-073

• 生物工程 • 上一篇    

串联质谱标签定量蛋白质组学解析产酯酶Pichia kudriavzevii混菌发酵代谢机制

蔡岭肸,刘春艳,郑佳,张楷正,苏建,邹伟   

  1. (1.四川轻化工大学生物工程学院,四川?宜宾 644005;2.宜宾五粮液股份有限公司,四川?宜宾 644000;3.四川轻化工大学 酿酒生物技术及应用四川省重点实验室,四川?宜宾 644005)
  • 发布日期:2025-07-22
  • 基金资助:
    酿酒生物技术及应用四川省重点实验室项目(NJ2023-07); 五粮液集团公司-四川轻化工大学产学研合作项目(CXY2019ZR011)

Quantitative Proteomics Analysis Using Tandem Mass Tags of the Metabolic Mechanism of Esterase-Producing Pichia kudriavzevii in Mixed-Culture Fermentation

CAI Lingxi, LIU Chunyan, ZHENG Jia, ZHANG Kaizheng, SU Jian, ZOU Wei   

  1. (1. College of Bioengineering, Sichuan University of Science and Engineering, Yibin 644005, China; 2. Wuliangye Yibin Co., Ltd., Yibin 644000, China; 3. Liquor Brewing Biotechnology and Application Key Laboratory of Sichuan Province, Sichuan University of Science and Engineering, Yibin 644005, China)
  • Published:2025-07-22

摘要: 为探究产酯酶库德里阿兹威毕赤酵母(Pichia kudriavzevii)混菌发酵的代谢机制,本研究使用串联质谱标签(tandem mass tags,TMT)定量蛋白质组学技术,对P. kudriavzevii JM5-4单菌纯培养以及与丁酸梭菌(Clostridium butyricum)GD1-1共培养条件下的蛋白质组学进行分析。利用气相色谱-质谱联用仪检测单菌与混菌发酵时的代谢产物。结果显示,混菌发酵时发酵液中乙醇、乙酸、乙酸乙酯的产量分别为2.396、0.425 g/L和0.544 g/L,分别是单菌发酵的1.5、4.0 倍和2.0 倍。利用TMT定量蛋白质组学技术鉴定到3 164 个可定量蛋白质。共筛选到355 个差异表达蛋白(differentially expressed proteins,DEPs),包括上调蛋白159 个、下调蛋白质196 个。基因本体论和京都基因与基因组百科全书(Kyoto Encyclopedia of Genes and Genomes,KEGG)数据库功能富集分析显示,三羧酸循环、药物代谢、小分子代谢、细胞质大核糖体亚基、细胞质核糖体、烟酰胺腺嘌呤二核苷酸结合、氧化还原酶活性等定位蛋白质发生了显著性变化。利用CELLO软件对DEPs进行亚细胞定位,将257 个蛋白质定位到8 个不同的细胞器,主要分布在细胞质(129 个)、线粒体(91 个)、细胞核(19 个)等。355 个DEPs通过KEGG注释显示其主要涉及氧化磷酸化、辅因子的生物合成、三羧酸循环、糖酵解/糖异生等代谢亚系统。在混菌发酵时,糖酵解/糖异生(丙酮酸脱氢酶、醛脱氢酶等)、三羧酸代谢(柠檬酸合酶、乌头酸盐水合酶、富马酸水合酶、苹果酸脱氢酶等)、乙醛酸和二羧酸代谢(羟基丙酮酸还原酶、乙醛酸还原酶等)的DEPs全部上调,表明共培养条件下明显促进了JM5-4的生长与代谢。此外,涉及酯酶(S-甲酰谷胱甘肽水解酶、核糖核酸酶、海藻糖磷酸酶)的DEPs全部上调,表明混菌发酵对JM5-4产酯酶能力具有一定的积极作用。本研究可为探究白酒酿造过程中的混菌发酵机制、菌株代谢特性以及提高白酒风味品质提供一定的理论指导。

关键词: 白酒;Pichia?kudriavzevii;串联质谱标签定量蛋白质组学;代谢产物;酯酶

Abstract: To investigate the metabolic mechanism of esterase-producing Pichia kudriavzevii in mixed-culture fermentation, this study carried out tandem mass tag (TMT)-based quantitative proteomic analysis on P. kudriavzevii JM5-4 under pure culture and co-culture with Clostridium butyricum GD1-1. The metabolites of pure culture and co-culture were analyzed using gas chromatography-mass spectrometry (GC-MS). The results demonstrated that in mixed-culture fermentation, the yields of ethanol, acetic acid, and ethyl acetate were 2.396, 0.425, and 0.544 g/L, respectively, which increased by 1.5, 4.0, and 2.0 times when compared with monoculture fermentation respectively. Through TMT-based quantitative proteomics, a total of 3 164 quantifiable proteins were identified. Among these, 355 differentially expressed proteins (DEPs) were detected, out of which 159 were up-regulated and 196 were down-regulated. Gene Ontology (GO) and Kyoto Encyclopedia of Genes and Genomes (KEGG) functional enrichment analyses revealed significant alterations in the localization of proteins associated with tricarboxylic acid cycle, drug metabolism, small molecule metabolism, cytoplasmic large ribosomal subunits, cytoplasmic ribosomes, nicotinamide adenine dinucleotide binding, and oxidoreductase activity. The subcellular localization of the DEPs was analyzed using the online software CELLO, which assigned 257 proteins to eight distinct organelles, mainly distributed in the cytoplasm (129), mitochondria (91) and nucleus (19). KEGG annotation showed that these 355 DEPs were involved in metabolic subsystems such as oxidative phosphorylation, cofactor biosynthesis, the tricarboxylic acid cycle, and glycolysis/gluconeogenesis. During mixed-culture fermentation, all DEPs related to glycolysis/gluconeogenesis (e.g., pyruvate dehydrogenase and aldehyde dehydrogenase), tricarboxylic acid metabolism (including citrate synthase, aconitase, fumarase, and malate dehydrogenase), and glyoxylate and dicarboxylate metabolism (such as hydroxyl pyruvate reductase and aldehyde acid reductase) were up-regulated, indicating a significant enhancement in the growth and metabolism of JM5-4. Furthermore, DEPs associated with esterases (such as S-formyl glutathione hydrolase, ribonuclease, and trehalose phosphate phosphatase) were significantly up-regulated, suggesting that mixed-strain fermentation positively influenced the esterase-producing capacity of JM5-4. This study provides theoretical guidance for understanding the mechanism of mixed-strain fermentation in baijiu brewing and the metabolic characteristics of strains.

Key words: baijiu; Pichia kudriavzevii; tandem mass tag-based quantitative proteomics; metabolic products; esterase

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