食品科学 ›› 2022, Vol. 43 ›› Issue (2): 199-209.doi: 10.7506/spkx1002-6630-20201110-105

• 生物工程 • 上一篇    下一篇

黄皮转录组测序及抗氧化相关基因的挖掘

刘照宇,刘新婷,白新宇,李雯,曾教科   

  1. (海南大学园艺学院,海南 海口 570228)
  • 出版日期:2022-01-25 发布日期:2022-01-29
  • 基金资助:
    海南省教育厅项目(Hnky2019-18);海南大学科研启动基金项目(KYQD(ZR)1838); 海南省自然科学基金项目(20163039)

Transcriptome Sequencing of Clausena lansium and Mining of Antioxidation-Related Genes

LIU Zhaoyu, LIU Xinting, BAI Xinyu, LI Wen, ZENG Jiaoke   

  1. (College of Horticulture, Hainan University, Haikou 570228, China)
  • Online:2022-01-25 Published:2022-01-29

摘要: 为从分子水平研究黄皮果实抗氧化酶抑制褐变的机理,以热激(heat treatment,HT)、程序降温(low temperature conditioning,LTC)和对照(CK)组处理后3 ℃贮藏的黄皮果实为材料,研究温度对黄皮果实褐变及抗氧化效果的影响,并应用转录组测序技术对黄皮果实RNA进行测序分析。结果表明:与CK相比,HT和LTC处理均可有效延缓黄皮果实采后褐变与失水,维持贮藏中后期较高的超氧化物歧化酶、过氧化物酶和过氧化氢酶等抗氧化酶活性,同时保持较高的1,1-二苯基-2-三硝基苯肼自由基清除能力;贮藏第6天开始,LTC处理对黄皮果实的抗氧化效果显著提高。转录组测序共35 421 个转录本;HT第6天和CK第6天相比筛选出1 631 个差异表达基因(differentially expressed genes,DEGs),LTC第6天和CK第6天相比筛选出5 404 个DEGs;基因本体论和京都基因与基因组百科全书富集分析表明,此类DEGs主要集中于植物激素信号转导途径、苯丙素生物合成和黄酮类化合物的生物合成途径等,这些途径均与植物的抗氧化/抗褐变相关。从已获得的DEGs中筛选得出HT和LTC处理可能通过诱导第IV类、V类和X类抗氧化基因的表达,从而延缓黄皮果实褐变发生。研究结果为黄皮抗氧化相关基因挖掘和褐变调控提供理论数据支撑。

关键词: 黄皮;抗氧化;转录组测序;差异表达基因

Abstract: In order to investigate how antioxidant enzymes inhibit the browning process of wampee fruit, we performed RNA sequencing using RNA-Seq technique on Clausena lansium fruit subjected to heat treatment (HT), low temperature conditioning (LTC) or no treatment (control) and then stored at 3 ℃ for 8 days. The results showed that compared with the control group, HT and LTC treatment could effectively postpone postharvest browning and water loss of wampee fruit, maintain higher activities of superoxide dismutase, peroxidase and catalase at the mid-to-late stage as well as higher 1,1-diphenyl-2-picrylhydrazyl (DPPH) radical-scavenging capacity. The antioxidant activity of LTC-treated fruit began to significantly increase starting from the sixth day of storage. RNA-Seq results showed that totally 35 421 transcripts were collected; 1 631 and 5 404 differentially expressed genes (DEGs) were obtained on day 6 after HT and LTC treatment, respectively, compared with the control group. Gene ontology (GO) and Kyoto Encyclopedia of Genes and Genomes (KEGG)?enrichment analysis?showed that these DEGs were mainly involved in plant hormone signal transduction, flavonoid biosynthesis, and phenylpropanoid biosynthesis, which may be related to antioxidant activity or browning resistance. From the DEGs, antioxidant gene groups IX, V and X were selected, whose expression could be induced by HT or LTC, thus delaying browning. These results may provide a theoretical basis for mining key antioxidant genes associated with wampee fruit browning.

Key words: Clausena lansium; antioxidant; transcriptome; differentially expressed genes

中图分类号: