食品科学 ›› 2026, Vol. 47 ›› Issue (13): 153-163.doi: 10.7506/spkx1002-6630-20251027-198

• 生物工程 • 上一篇    下一篇

植物乳植杆菌RS20D源酚酸脱羧酶LpPAD催化咖啡酸的表征及分子动力学模拟

赵润棠,成玉,胡子寒,王培芳,李建龙,刘书亮,李琴   

  1. (四川农业大学食品学院,四川 雅安 625014)
  • 出版日期:2026-07-15 发布日期:2026-07-17
  • 基金资助:
    国家自然科学基金青年科学基金项目(31901634);省级大学生创新创业训练计划项目(S202510626050)

Characterization and Molecular Dynamics Simulation of LpPAD, a Caffeic Acid-Specific Phenolic Acid Decarboxylase from Lactiplantibacillus plantarum RS20D

ZHAO Runtang, CHENG Yu, HU Zihan, WANG Peifang, LI Jianlong, LIU Shuliang, LI Qin   

  1. (College of Food Science, Sichuan Agricultural University, Ya’an 625014, China)
  • Online:2026-07-15 Published:2026-07-17

摘要: 酚酸脱羧酶(phenolic acid decarboxylase,PAD,EC 4.1.1.102)能够特异性催化酚酸类底物发生不可逆的脱羧反应,生成相应的4-乙烯基衍生物,在食品风味强化与生物催化领域具有重要应用价值。不同菌株所产PAD的酶学性质存在显著差异,这极大限制了对其针对性的开发与应用。因此,从特定菌株中发掘新型PAD并系统解析其酶学特性,对于拓展该酶的资源库并推动其实际应用具有重要意义。从植物乳植杆菌(Lactiplantibacillus plantarum)RS20D中克隆PAD基因并予以表达,获得重组PAD(LpPAD)。酶学性质研究表明,LpPAD对咖啡酸具有最高比活力及催化效率。通过分子动力学模拟,发现LpPAD结合咖啡酸后,酶构象稳定性增强、活性中心柔性优化、结构互补性提升。结合等温滴定量热法分析,证实LpPAD与咖啡酸结合过程存在强协同效应,具有最低解离常数及最大熵变贡献,表明LpPAD与其结合稳定性及反应驱动力显著优于其他酚酸底物。本研究阐明了LpPAD特异性催化咖啡酸的构效关系,为定向改造PAD及4-乙烯基邻苯二酚的工业生物制造提供了一定的理论依据。

关键词: 酚酸脱羧酶;咖啡酸;酶学性质;分子动力学模拟;等温滴定量热

Abstract: Phenolic acid decarboxylase (PAD, EC 4.1.1.102) specifically catalyzes irreversible decarboxylation of phenolic acids, producing 4-vinyl derivatives, which have great application value in the fields of food flavor enhancement and biocatalysis. The substantial variation in enzymatic properties of PADs produced by different strains restricts their precise application. Accordingly, exploration and systematic enzymatic characterization of novel PADs from specific strains are of great significance for expanding the PAD resource library and advancing their practical application. In this study, a PAD gene from Lactiplantibacillus plantarum RS20D was heterologously expressed, yielding the recombinant enzyme LpPAD. LpPAD exhibited the highest specific activity and catalytic efficiency toward caffeic acid. Molecular dynamics simulations revealed that the binding of LpPAD to caffeic acid led to a more stable conformation of the enzyme as well as optimized active-site flexibility and structural complementarity. Isothermal titration calorimetry (ITC) further demonstrated that there was a strong synergistic effect in the binding process of caffeic acid, with the lowest dissociation constant and highest entropic contribution, indicating superior binding affinity and reaction driving force. These findings provide structural insights into the substrate specificity of LpPAD toward caffeic acid, establishing a theoretical framework for the directed modification of PAD and the industrial-scale bioproduction of 4-vinylcatechol.

Key words: phenolic acid decarboxylase; caffeic acid; enzymatic properties; molecular dynamics simulation; isothermal titration calorimetry

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