食品科学 ›› 2022, Vol. 43 ›› Issue (20): 172-182.doi: 10.7506/spkx1002-6630-20211025-267

• 生物工程 • 上一篇    下一篇

基于Illumina MiSeq测序技术分析大鲵肉冷藏过程中微生物菌群演替规律

赵萍,金文刚,兰阿峰,刘俊霞,裴金金,陈德经   

  1. (1.陕西理工大学生物科学与工程学院,秦巴生物资源与生态环境省部共建培育国家重点实验室,陕西 汉中 723001;2.陕西理工大学 陕西省资源生物重点实验室,陕西 汉中 723001;3.陕西理工大学 陕南秦巴山区生物资源综合开发协同创新中心,陕西 汉中 723001)
  • 出版日期:2022-10-25 发布日期:2022-10-26
  • 基金资助:
    陕西省“三秦学者”创新团队支持计划项目(陕组[2018]34号);陕西理工大学重点科研项目(SLG2106); 汉中市青年科技创新团队项目(汉科[2019]26号)

Succession of Microbial Community in Giant Salamander (Andrias davidianus) Meat during Cold Storage Investigated by Illumina MiSeq High-Throughput Sequencing

ZHAO Ping, JIN Wengang, LAN Afeng, LIU Junxia, PEI Jinjin, CHEN Dejing   

  1. (1. State Key Laboratory of Biological Resources and Ecological Environment Jointly Built by Province and Ministry, School of Biological Science and Engineering, Shaanxi University of Technology, Hanzhong 723001, China; 2. Key Laboratory of Bio-resources of Shaanxi Province, Shaanxi University of Technology, Hanzhong 723001, China; 3. Collaborative Innovation Center for Comprehensive Development of Bio-resources in Qinba Mountain Area of Southern Shaanxi, Shaanxi University of Technology, Hanzhong 723001, China)
  • Online:2022-10-25 Published:2022-10-26

摘要: 为探究大鲵肉冷藏过程中菌相组成及特定腐败微生物,对托盘包装大鲵肉不同冷藏时间(4 ℃,0、2、4、6、8 d)的挥发性盐基氮和菌落总数进行评价,在此基础上采用Illumina MiSeq测序技术探究其微生物菌群变化与多样性。结果表明,大鲵肉在冷藏过程中菌落总数和挥发性盐基氮呈上升趋势,分别在第6天和第8天超标。高通量测序结果显示,大鲵肉中微生物丰度随着冷藏时间的延长呈降低趋势。在门水平上进行群落组成分析,细菌的优势菌门从冷藏前期(0、2 d)的拟杆菌门、厚壁菌门逐渐转变为中(4 d)、后期(6、8 d)的变形菌门。在属水平上细菌的优势菌属从冷藏前期主要的拟杆菌属、Faecalibacterium逐渐转变为中、后期的假单胞菌属、气单胞菌属、Hafnia-Obesumbacterium、沙雷氏菌属。主坐标分析显示0-2、4、6、8 d之间微生物菌群差异较大,2 个主坐标叠加解释度达80.92%;LEfSe分析表明,引起大鲵肉各冷藏期差异显著的菌门主要为变形菌门、放线菌门、拟杆菌门、纤维杆菌门、厚壁菌门,菌属主要为假黄单胞菌属、Bauldia、沙雷氏菌属、不动杆菌属、气单胞菌属、假单胞菌属、ambiguous_taxa、Hafnia-Obesumbacterium、Rikenellaceae_RC9_gut_group、Prevotella_9、拟杆菌属、纤维杆菌属、毛螺菌属、Faecalibacterium、Clostridium_sensu_stricto_1。进化分析表明大鲵肉冷藏过程中微生物菌群演替与冷藏时间具有较强相关性。综合分析,引起冷藏期间大鲵肉腐败变质的微生物主要为假单胞菌属、气单胞菌属、Hafnia-Obesumbacterium和沙雷氏菌属。该研究为今后大鲵肉冷藏过程中靶向抑菌及货架期延长提供了参考。

关键词: 大鲵;冷藏;高通量测序技术;16S?rDNA;特定腐败菌;微生物多样性

Abstract: To explore the microbial community and special spoilage bacteria in pallet-packaged giant salamander (Andrias davidianus) meat during cold storage, the total volatile basic nitrogen (TVB-N) content and total bacterial count of giant salamander meat were evaluated after different refrigeration durations (0, 2, 4, 6 and 8 d) at 4 ℃, and the changes and diversity of the microbial flora were explored by Illumina MiSeq sequencing. The results showed that the total count of bacteria and TVB-N levels in salamander meat showed an upward trend during refrigeration, and exceeded the safety limit on the 6th and 8th days, respectively. The results of high-throughput sequencing showed that the microbial abundance in giant salamander meat decreased with storage time. The dominant phyla of bacteria were Bacteroidetes and Firmicutes during the early storage period (0 and 2 d), and Proteobacteria during the middle (4 d) and late (6 and 8 d) storage periods. The dominant genera were Bacteroidetes and Faecalibacterium during the early storage period, and Pseudomonas, Aeromonas, Hafnia-Obesumbacterium and Serrella during the middle and late storage periods. Principal coordinate analysis showed that there were great differences in microbial community structure between the three storage periods, and the degree of superposed interpretation of the two principal coordinates was 80.92%. Linear discriminant analysis effect size (LEfSe) analysis showed that Proteobacteria, Actinobacteria, Bacteroides, Fibrinobacteria and Firmicutes were the major bacterial phyla that significantly changed during cold storage. The main bacterial genera that significantly changed during storage were Pseudoxanthomonas, Bauldia, Serrella, Acinetobacter, Aeromonas, Pseudomonas, ambiguous_taxa, Hafnia-Obesumbacterium, Rikenellaceae_RC9_gut_group, Prevotella_9, Bacteroides, Fibrobacter, Lachnospira, Faecalibacterium, Clostridium_sensu_stricto_1. Evolutionary analysis showed that there was a strong correlation between the succession of microflora and storage time. Overall, the dominant spoilage microorganisms in giant salamander meat are Pseudomonas, Aeromonas, Hafnia-Obesumbacterium and Serrella. This study provides a reference for the targeted bacteriostasis of spoilage bacteria in giant salamander meat during cold storage to extend its shelf life in the future.

Key words: giant salamander; cold storage; high-throughput sequencing technology; 16S rDNA; specific spoilage bacteria; microbial diversity

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