食品科学 ›› 2020, Vol. 41 ›› Issue (18): 92-97.doi: 10.7506/spkx1002-6630-20190714-180

• 生物工程 • 上一篇    下一篇

基于16S rRNA高通量测序的西藏农、牧区牦牛酸奶菌群多样性分析

刘怡萱,许国琪,曹鹏熙,金彦龙,李小燕,刘星   

  1. (1.西藏大学理学院,西藏?拉萨 850000;2.西藏大学生态学研究中心,极端环境生物资源与适应性进化实验室,西藏?拉萨 850000;3.武汉大学生命科学学院,武汉大学-西藏大学生态与保护联合研究中心,湖北?武汉 430072)
  • 出版日期:2020-09-25 发布日期:2020-09-18
  • 基金资助:
    西藏自治区自然科学基金项目(2016ZR-TU-04);2019年中央支持地方高校改革发展专项(藏财预指〔2019〕01号); 西藏大学研究生高水平人才培养计划项目(2017-GSP-114;2015-GSP-001)

Microbial Diversity of Yak Yogurt in Agricultural and Pastoral Areas of Tibet Analyzed Based on High-throughput 16S rRNA Gene Sequencing

LIU Yixuan, XU Guoqi, CAO Pengxi, JIN Yanlong, LI Xiaoyan, LIU Xing   

  1. (1. School of Science, Tibet University, Lhasa 850000, China; 2. Laboratory of Extreme Environmental Biological Resources and Adaptive Evolution, Research Center for Ecology, Tibet University, Lhasa 850000, China; 3. Wuhan University-Tibet University Joint Research Center for Ecology and Conservation, College of Life Sciences, Wuhan University, Wuhan 430072, China)
  • Online:2020-09-25 Published:2020-09-18

摘要: 运用高通量测序技术,对西藏农、牧区牦牛酸奶中细菌多样性及其差异进行分析,并探究环境因素对其差异形成的影响。样本层级聚类及主坐标分析结果显示农、牧区的样本菌群结构具有明显差异;多级物种差异判别分析及组间差异分析表明,农、牧区牦牛酸奶菌群的优势属均为厚壁菌门(Firmicutes)下的乳杆菌属(Lactobacillus)、乳球菌属(Lactococcus)及链球菌属(Streptococcus),上述3?个属及其余7?个丰度相对较低的属在不同区域牦牛酸奶中具有显著差异(P<0.05);对环境因子的回归分析和基于距离的冗余分析显示海拔高度对样本间差异的解释度大于年平均气温。本研究为进一步揭示自然环境与青藏高原发酵食品中微生物多样性之间的关系、筛选优良菌种提供参考。

关键词: 青藏高原;牦牛酸奶;微生物多样性;高通量测序技术;16S?rRNA

Abstract: In this study, the bacterial diversity and its differences in yak yoghurt collected from agricultural and pastoral areas in Tibet were analyzed by high throughput sequencing technology. The influence of environmental factors on the differences was explored. The results of hierarchical clustering and principal coordinate analysis (PCoA) showed that the microbiota structure of yak yogurt was significantly different between agricultural and pastoral areas. Linear discriminant analysis effect size (LEfSe) analysis showed that the dominant bacterial genera in yak yogurt from both agricultural and pastoral areas were Lactobacillus, Lactococcus and Streptococcus under Firmicutes. The three genera and seven other genera with relatively low abundance were significantly different between yak yogurt samples from the different regions (P < 0.05). Regression analysis and distance-based redundancy analysis (db-RDA) of environmental factors showed that elevation explained the difference between samples more than did average annual temperature. This study provides a reference for further studies on the relationship between the natural environment and the microbial diversity in fermented food in the Qinghai-Tibet plateau and for screening for excellent strains.

Key words: Qinghai-Tibet plateau; yak yogurt; microbial diversity; high-throughput sequencing; 16S rRNA gene

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